Tokyo's electronic systems have gone haywire. Taichi, a primary school aged child is suddenly transported to another world inside the internet, encountering a shape of life called Digimon.
Yamato and his partner Garurumon join Taichi and Koshiro on their mission to stop the Argomon hacking into the U.S. military.
Taichi, Yamato and Koshi fight desperately against the enemy Digimon. The missiles are launched at Tokyo. Furthermore, bullets of light fired by the enemy Digimon hit Greymon and Garurumon directly. Then, an enormous white Digimon appears.
Taichi, Agumon and Sora continue their journey and they meet Piyomon who was running from a hostile digimon. Koshiro befriends Tentomon.
Taichi and others are told the story of an ancient war between the Digimon of light and darkness, and are instructed to look for the Holy Digimon.
Taichi’s party comes across an orchard and meets a mysterious girl, Mimi. Taichi and his friends find out that a kingdom is targeted by some ferocious Digimon.
The children now know that the Holy Digimon is the key to saving Tokyo from the blackouts. They attempt to cross the sea to get to the continent, but they’re suddenly attacked by a mysterious whirlpool.
The children finally succeed in crossing the sea with Ikkakumon’s help. However, what awaits them on the other side is a fortress full of Digimon…
The six children and Digimon neutralize the fortress thanks to excellent teamwork. They try to decode the enemy’s communication log and obtain new information about the Holy Digimon. However, it’s not long before new enemies approach the fortress one after another.
The battle between Greymon and Orgemon ended abruptly and now the Chosen Ones discuss their next move. Taichi and Agumon take a chance to defeat the ultimate enemy, so that the others can safely head to their next destination.
The six Chosen Ones who had finally gathered split up again into two teams in order to find the Holy Digimon. As Yamato’s team attempts to cross the desert, they encounter some dust devils.
Taichi’s team reaches an ancient ruin. While Koshiro tries to analyze the characters on the walls, Mimi and Palmon accidentally fall underground. When they’re in danger, they encounter a kindhearted Digimon.
Yamato’s team flies above an endless jungle on Birdramon until they come across a floating fortress. Sora’s caring heart that wants to save Digimon in trouble brings about a new glow on Piyomon.
Taichi’s team reaches a canyon where they are attacked by a swarm of insect Digimon. In the chaos that ensues, Koshiro and Tentomon stand up to protect their friends.
While Taichi’s team finishes fighting off Oukuwamon and Kuwagamon in the canyon maze, Sora’s team reaches a snowy mountain where they are attacked by a group of Digimon. Joe and Ikkakumon stand up to save Sora from danger.
Taichi’s team finds a strange cave that leads to Tokyo. Excited to be back, the children attempt to get home through the subway. However, a creepy Digimon prowls the city, and there, the children learn a shocking truth.
Just when Taichi and his friends thought they had finally defeated the enemy in the fake Tokyo, a new enemy appeared. The children work together with their Digimon to take down the eight-headed Ultimate Digimon.
The Chosen Ones worked together and succeeded in defeating Ultimate Digimon Orochimon. However, a mysterious countdown begins. To save Tokyo, they must prevent it from reaching zero
Thanks to Omegamon’s reappearance, the Mega Digimon Nidhoggmon, was finally defeated. However, Sora and the others disappeared after being swallowed by a storm. Taichi and Yamato, who are left behind in the Digital World sneak into Valvemon.
Yamato’s younger brother, Takeru, is unexpectedly found in the Digital World, held captive by a powerful Digimon. With the help of Leomon’s army, Taichi and Yamato attempt to save Takeru.
The Holy Digimon that turned into a Digitama was snatched away, and Taichi and Yamato chase after Skullknightmon. Meanwhile, the rest of the Chosen Ones that are back in Tokyo fight remotely with their partner Digimon in the Digital World.
Thanks to Takeru’s bravery, Taichi and the others found the way into the castle where the Digitama is held. As for the Chosen Ones in Tokyo, they were in a remote battle against Calamaramon to stop an uncontrollable tanker from crashing.
Devimon’s castle collapsed after the fierce battle with Darkknightmon and Taichi’s group comes to face Devimon at last. Meanwhile, the rest of the Chosen Ones and their partner Digimon fight to destroy the obelisk that is transferring energy.
Thanks to Koshiro’s group destroying the obelisk which was transferring energy to the Digital World, Taichi and the others defeated Neodevimon at last. However, Taichi struggles against the overwhelming powers of Donedevimon
The battle with Donedevimon is over at last. However, destiny wasted no time in bringing the next adventure to the Chosen Ones. Koshiro’s group is dealing with tanker collisions while Taichi’s group is attacked by a cluster of Mamemon.
Taichi has fallen down to the ocean below Cloud Continent with Leomon and the others. Powerful, new Digimon attack them one after another. Meanwhile, Koshiro’s side tries carry out a counterplan to bring the unresponsive ships under control.
Taichi’s younger sister Hikari and Koshiro's group are brought to the Digital World just in time to save Taichi's group. The Chosen Ones are now reunited once again. However, another disaster, this time at a rocket launch site, hits the real world.
The Chosen Ones come to face their old enemy, Darkknightmon. Patamon evolves into Angemon again to fight off Darkknightmon. However, the children are all separated and sent to different parts of the continent.
Hikari is suddenly taken away by Skullknightmon and Taichi could do nothing but watch. On his mission to save Hikari, he meets many kinds of Digimon in the jungle and fights for them as the jungle burns.
Taichi and Agumon act as bait so that the jungle’s Digimon can safely escape. However, Metalgreymon’s attacks are useless against the new Mega Digimon that stands in their way.